Location: SLC transporters @ de5db6ae42f5 / Electrogenic cotransporter / CellMLV2 / SGLT1_ss_fast.sedml

Author:
Weiwei Ai <wai484@aucklanduni.ac.nz>
Date:
2024-05-23 13:59:34+12:00
Desc:
Add original data; change to relative path; format the axis labels;
Permanent Source URI:
https://models.physiomeproject.org/workspace/b65/rawfile/de5db6ae42f57e8a5cb7b4e1aec24803b1483fc4/Electrogenic cotransporter/CellMLV2/SGLT1_ss_fast.sedml
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<?xml version="1.0" encoding="UTF-8"?>
<sedML xmlns="http://sed-ml.org/sed-ml/level1/version4" level="1" version="4">
  <listOfModels>
    <model id="SGLT1_ss_fast_fig5" language="urn:sedml:language:cellml" source="SGLT1_ss_fast.cellml">
      <listOfChanges>
        <changeAttribute target="/cellml:model/cellml:component[@name=&quot;params_BG&quot;]/cellml:variable[@name=&quot;Glco&quot;]/@initial_value" newValue="1e-12"/>
      </listOfChanges>
    </model>
    <model id="SGLT1_ss_fast_fig5_sugar" language="urn:sedml:language:cellml" source="SGLT1_ss_fast.cellml">
      <listOfChanges>
        <changeAttribute target="/cellml:model/cellml:component[@name=&quot;params_BG&quot;]/cellml:variable[@name=&quot;Glco&quot;]/@initial_value" newValue="1"/>
      </listOfChanges>
    </model>
  </listOfModels>
  <listOfSimulations>
    <uniformTimeCourse id="sim_SGLT1_ss_fast_fig5" initialTime="0" outputStartTime="0" outputEndTime="20" numberOfSteps="200">
      <algorithm name="VODE" kisaoID="KISAO:0000535">
        <listOfAlgorithmParameters>
          <algorithmParameter name="rtol" kisaoID="KISAO:0000209" value="1e-12"/>
          <algorithmParameter name="atol" kisaoID="KISAO:0000211" value="1e-12"/>
        </listOfAlgorithmParameters>
      </algorithm>
    </uniformTimeCourse>
    <uniformTimeCourse id="sim_SGLT1_ss_fast_fig5_sugar" initialTime="0" outputStartTime="0" outputEndTime="20" numberOfSteps="200">
      <algorithm name="VODE" kisaoID="KISAO:0000535">
        <listOfAlgorithmParameters>
          <algorithmParameter name="rtol" kisaoID="KISAO:0000209" value="1e-12"/>
          <algorithmParameter name="atol" kisaoID="KISAO:0000211" value="1e-12"/>
        </listOfAlgorithmParameters>
      </algorithm>
    </uniformTimeCourse>
  </listOfSimulations>
  <listOfTasks>
    <task id="task_SGLT1_ss_fast_fig5" modelReference="SGLT1_ss_fast_fig5" simulationReference="sim_SGLT1_ss_fast_fig5"/>
    <task id="task_SGLT1_ss_fast_fig5_sugar" modelReference="SGLT1_ss_fast_fig5_sugar" simulationReference="sim_SGLT1_ss_fast_fig5_sugar"/>
  </listOfTasks>
  <listOfDataGenerators>
    <dataGenerator id="dg_SGLT1_ss_fast_fig5_t" name="dg_SGLT1_ss_fast_fig5_t">
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <apply>
          <times/>
          <ci> SGLT1_ss_fast_fig5_t </ci>
          <ci> scale </ci>
        </apply>
      </math>
      <listOfVariables>
        <variable id="SGLT1_ss_fast_fig5_t" target="/cellml:model/cellml:component[@name=&quot;SGLT1_BG&quot;]/cellml:variable[@name=&quot;t&quot;]" taskReference="task_SGLT1_ss_fast_fig5" modelReference="SGLT1_ss_fast_fig5"/>
      </listOfVariables>
      <listOfParameters>
        <parameter id="scale" value="1"/>
      </listOfParameters>
    </dataGenerator>
    <dataGenerator id="dg_SGLT1_ss_fast_fig5_Ii" name="dg_SGLT1_ss_fast_fig5_Ii">
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <apply>
          <times/>
          <ci> SGLT1_ss_fast_fig5_Ii </ci>
          <ci> scale </ci>
        </apply>
      </math>
      <listOfVariables>
        <variable id="SGLT1_ss_fast_fig5_Ii" target="/cellml:model/cellml:component[@name=&quot;SGLT1_BG&quot;]/cellml:variable[@name=&quot;Ii&quot;]" taskReference="task_SGLT1_ss_fast_fig5" modelReference="SGLT1_ss_fast_fig5"/>
      </listOfVariables>
      <listOfParameters>
        <parameter id="scale" value="-1e-06"/>
      </listOfParameters>
    </dataGenerator>
    <dataGenerator id="dg_SGLT1_ss_fast_fig5_Ii_1" name="dg_SGLT1_ss_fast_fig5_Ii_1">
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <apply>
          <times/>
          <ci> SGLT1_ss_fast_fig5_Ii_1 </ci>
          <ci> scale </ci>
        </apply>
      </math>
      <listOfVariables>
        <variable id="SGLT1_ss_fast_fig5_Ii_1" target="/cellml:model/cellml:component[@name=&quot;SGLT1_BG&quot;]/cellml:variable[@name=&quot;Ii_1&quot;]" taskReference="task_SGLT1_ss_fast_fig5" modelReference="SGLT1_ss_fast_fig5"/>
      </listOfVariables>
      <listOfParameters>
        <parameter id="scale" value="-1e-06"/>
      </listOfParameters>
    </dataGenerator>
    <dataGenerator id="dg_SGLT1_ss_fast_fig5_V0_Vm" name="dg_SGLT1_ss_fast_fig5_V0_Vm">
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <apply>
          <times/>
          <ci> SGLT1_ss_fast_fig5_V0_Vm </ci>
          <ci> scale </ci>
        </apply>
      </math>
      <listOfVariables>
        <variable id="SGLT1_ss_fast_fig5_V0_Vm" target="/cellml:model/cellml:component[@name=&quot;params_BG&quot;]/cellml:variable[@name=&quot;V0_Vm&quot;]" taskReference="task_SGLT1_ss_fast_fig5" modelReference="SGLT1_ss_fast_fig5"/>
      </listOfVariables>
      <listOfParameters>
        <parameter id="scale" value="1000"/>
      </listOfParameters>
    </dataGenerator>
    <dataGenerator id="dg_SGLT1_ss_fast_fig5_sugar_t" name="dg_SGLT1_ss_fast_fig5_sugar_t">
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <apply>
          <times/>
          <ci> SGLT1_ss_fast_fig5_sugar_t </ci>
          <ci> scale </ci>
        </apply>
      </math>
      <listOfVariables>
        <variable id="SGLT1_ss_fast_fig5_sugar_t" target="/cellml:model/cellml:component[@name=&quot;SGLT1_BG&quot;]/cellml:variable[@name=&quot;t&quot;]" taskReference="task_SGLT1_ss_fast_fig5_sugar" modelReference="SGLT1_ss_fast_fig5_sugar"/>
      </listOfVariables>
      <listOfParameters>
        <parameter id="scale" value="1"/>
      </listOfParameters>
    </dataGenerator>
    <dataGenerator id="dg_SGLT1_ss_fast_fig5_sugar_Ii" name="dg_SGLT1_ss_fast_fig5_sugar_Ii">
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <apply>
          <times/>
          <ci> SGLT1_ss_fast_fig5_sugar_Ii </ci>
          <ci> scale </ci>
        </apply>
      </math>
      <listOfVariables>
        <variable id="SGLT1_ss_fast_fig5_sugar_Ii" target="/cellml:model/cellml:component[@name=&quot;SGLT1_BG&quot;]/cellml:variable[@name=&quot;Ii&quot;]" taskReference="task_SGLT1_ss_fast_fig5_sugar" modelReference="SGLT1_ss_fast_fig5_sugar"/>
      </listOfVariables>
      <listOfParameters>
        <parameter id="scale" value="-1e-06"/>
      </listOfParameters>
    </dataGenerator>
    <dataGenerator id="dg_SGLT1_ss_fast_fig5_sugar_Ii_1" name="dg_SGLT1_ss_fast_fig5_sugar_Ii_1">
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <apply>
          <times/>
          <ci> SGLT1_ss_fast_fig5_sugar_Ii_1 </ci>
          <ci> scale </ci>
        </apply>
      </math>
      <listOfVariables>
        <variable id="SGLT1_ss_fast_fig5_sugar_Ii_1" target="/cellml:model/cellml:component[@name=&quot;SGLT1_BG&quot;]/cellml:variable[@name=&quot;Ii_1&quot;]" taskReference="task_SGLT1_ss_fast_fig5_sugar" modelReference="SGLT1_ss_fast_fig5_sugar"/>
      </listOfVariables>
      <listOfParameters>
        <parameter id="scale" value="-1e-06"/>
      </listOfParameters>
    </dataGenerator>
    <dataGenerator id="dg_SGLT1_ss_fast_fig5_sugar_V0_Vm" name="dg_SGLT1_ss_fast_fig5_sugar_V0_Vm">
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <apply>
          <times/>
          <ci> SGLT1_ss_fast_fig5_sugar_V0_Vm </ci>
          <ci> scale </ci>
        </apply>
      </math>
      <listOfVariables>
        <variable id="SGLT1_ss_fast_fig5_sugar_V0_Vm" target="/cellml:model/cellml:component[@name=&quot;params_BG&quot;]/cellml:variable[@name=&quot;V0_Vm&quot;]" taskReference="task_SGLT1_ss_fast_fig5_sugar" modelReference="SGLT1_ss_fast_fig5_sugar"/>
      </listOfVariables>
      <listOfParameters>
        <parameter id="scale" value="1000"/>
      </listOfParameters>
    </dataGenerator>
  </listOfDataGenerators>
  <listOfOutputs>
    <report id="report_task_SGLT1_ss_fast_fig5" name="report_task_SGLT1_ss_fast_fig5">
      <listOfDataSets>
        <dataSet id="dataset_SGLT1_ss_fast_fig5_t" label="t" dataReference="dg_SGLT1_ss_fast_fig5_t"/>
        <dataSet id="dataset_SGLT1_ss_fast_fig5_Ii" label="Ii" dataReference="dg_SGLT1_ss_fast_fig5_Ii"/>
        <dataSet id="dataset_SGLT1_ss_fast_fig5_Ii_1" label="Ii_1" dataReference="dg_SGLT1_ss_fast_fig5_Ii_1"/>
        <dataSet id="dataset_SGLT1_ss_fast_fig5_V0_Vm" label="V0_Vm" dataReference="dg_SGLT1_ss_fast_fig5_V0_Vm"/>
      </listOfDataSets>
    </report>
    <report id="report_task_SGLT1_ss_fast_fig5_sugar" name="report_task_SGLT1_ss_fast_fig5_sugar">
      <listOfDataSets>
        <dataSet id="dataset_SGLT1_ss_fast_fig5_sugar_t" label="t" dataReference="dg_SGLT1_ss_fast_fig5_sugar_t"/>
        <dataSet id="dataset_SGLT1_ss_fast_fig5_sugar_Ii" label="Ii" dataReference="dg_SGLT1_ss_fast_fig5_sugar_Ii"/>
        <dataSet id="dataset_SGLT1_ss_fast_fig5_sugar_Ii_1" label="Ii_1" dataReference="dg_SGLT1_ss_fast_fig5_sugar_Ii_1"/>
        <dataSet id="dataset_SGLT1_ss_fast_fig5_sugar_V0_Vm" label="V0_Vm" dataReference="dg_SGLT1_ss_fast_fig5_sugar_V0_Vm"/>
      </listOfDataSets>
    </report>
  </listOfOutputs>
</sedML>